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mbp beads  (New England Biolabs)


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    Structured Review

    New England Biolabs mbp beads
    (A) Yeast two-hybrid (Y2H) assay of UBP12/13 and CaMV proteins. Yeast co-transformants grown on nonselective media (-Leu/-Trp) and selective media (-Leu/-Trp/-His/-Ade) were shown. Vet.: empty vector. SD/-L.T indicates Leu and Trp drop-out medium. SD/-L.T.H.A indicates Leu, Trp, His and Ade drop-out medium. (B) In vitro pull-down assay shows a direct interaction between <t>GST-UBP12/13</t> and <t>MBP-P6.</t> GST-UBP12, GST-UBP13 and GST (negative control) were used as baits. MBP-P6 were used as target protein. G: GST. (C) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between UBP12/13 and P6 using transgenic Arabidopsis co-expressing P6 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody (negative control). Immunoprecipitates were then analyzed by immunoblotting assay using anti-GFP and anti-FLAG antibody. Input controls were shown. (D) Bimolecular fluorescence complementation (BiFC) assays between UBP12/13 and P6 in Arabidopsis protoplasts. Confocal imaging was performed at 12 h post inoculation. UBP12/13 and P6 were fused to nEYFP and cEYFP, respectively. mCherry-VirD2NLS was co-expressed as a nuclear marker. Bar, 5 μm.
    Mbp Beads, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 7637 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mbp+resin/Amylose+Resin/pmc13690193-203-0-2
    Average 99 stars, based on 7637 article reviews
    mbp beads - by Bioz Stars, 2026-11
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    Images

    1) Product Images from "The pathogenicity factor of DNA virus interacts with Arabidopsis deubiquitinases UBP12/13 to promote viral infection"

    Article Title: The pathogenicity factor of DNA virus interacts with Arabidopsis deubiquitinases UBP12/13 to promote viral infection

    Journal: PLOS Pathogens

    doi: 10.1371/journal.ppat.1014686

    (A) Yeast two-hybrid (Y2H) assay of UBP12/13 and CaMV proteins. Yeast co-transformants grown on nonselective media (-Leu/-Trp) and selective media (-Leu/-Trp/-His/-Ade) were shown. Vet.: empty vector. SD/-L.T indicates Leu and Trp drop-out medium. SD/-L.T.H.A indicates Leu, Trp, His and Ade drop-out medium. (B) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-P6. GST-UBP12, GST-UBP13 and GST (negative control) were used as baits. MBP-P6 were used as target protein. G: GST. (C) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between UBP12/13 and P6 using transgenic Arabidopsis co-expressing P6 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody (negative control). Immunoprecipitates were then analyzed by immunoblotting assay using anti-GFP and anti-FLAG antibody. Input controls were shown. (D) Bimolecular fluorescence complementation (BiFC) assays between UBP12/13 and P6 in Arabidopsis protoplasts. Confocal imaging was performed at 12 h post inoculation. UBP12/13 and P6 were fused to nEYFP and cEYFP, respectively. mCherry-VirD2NLS was co-expressed as a nuclear marker. Bar, 5 μm.
    Figure Legend Snippet: (A) Yeast two-hybrid (Y2H) assay of UBP12/13 and CaMV proteins. Yeast co-transformants grown on nonselective media (-Leu/-Trp) and selective media (-Leu/-Trp/-His/-Ade) were shown. Vet.: empty vector. SD/-L.T indicates Leu and Trp drop-out medium. SD/-L.T.H.A indicates Leu, Trp, His and Ade drop-out medium. (B) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-P6. GST-UBP12, GST-UBP13 and GST (negative control) were used as baits. MBP-P6 were used as target protein. G: GST. (C) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between UBP12/13 and P6 using transgenic Arabidopsis co-expressing P6 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody (negative control). Immunoprecipitates were then analyzed by immunoblotting assay using anti-GFP and anti-FLAG antibody. Input controls were shown. (D) Bimolecular fluorescence complementation (BiFC) assays between UBP12/13 and P6 in Arabidopsis protoplasts. Confocal imaging was performed at 12 h post inoculation. UBP12/13 and P6 were fused to nEYFP and cEYFP, respectively. mCherry-VirD2NLS was co-expressed as a nuclear marker. Bar, 5 μm.

    Techniques Used: Yeast, Y2H Assay, Plasmid Preparation, In Vitro, Pull Down Assay, Negative Control, Co-Immunoprecipitation Assay, Transgenic Assay, Expressing, Immunoprecipitation, Western Blot, Fluorescence, Confocal, Imaging, Marker

    (A) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-AC2. GST-UBP12, GST-UBP13 and GST (control) were used as baits. MBP-AC2 was used as the target protein. G: GST. (B) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between AC2 and UBP12/13 using the transgenic Arabidopsis co-expressing AC2 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody. Immunoprecipitates were then analyzed by immunoblotting assay using anti-MYC and anti-FLAG antibody. Input proteins were shown. (C) BiFC assays between UBP12/13 and AC2 in N. benthamiana . Confocal images were taken 2 days after infiltration. UBP12/13 and AC2 were respectively fused to nEYFP and cEYFP. H2B-mCherry was as a nuclear protein marker. Bar, 20 μm.
    Figure Legend Snippet: (A) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-AC2. GST-UBP12, GST-UBP13 and GST (control) were used as baits. MBP-AC2 was used as the target protein. G: GST. (B) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between AC2 and UBP12/13 using the transgenic Arabidopsis co-expressing AC2 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody. Immunoprecipitates were then analyzed by immunoblotting assay using anti-MYC and anti-FLAG antibody. Input proteins were shown. (C) BiFC assays between UBP12/13 and AC2 in N. benthamiana . Confocal images were taken 2 days after infiltration. UBP12/13 and AC2 were respectively fused to nEYFP and cEYFP. H2B-mCherry was as a nuclear protein marker. Bar, 20 μm.

    Techniques Used: In Vitro, Pull Down Assay, Control, Co-Immunoprecipitation Assay, Transgenic Assay, Expressing, Immunoprecipitation, Western Blot, Confocal, Marker

    Related Articles

    Incubation:

    Article Title: De novo variants in MRTFB have gain-of-function activity in Drosophila and are associated with a novel neurodevelopmental phenotype with dysmorphic features.
    Article Snippet: .. After rolling, precleared MBP resin (NEB, E8021S) was added to each tube and further incubated for 16 hours at 4 ◦C. .. A protease inhibitor cocktail (APExBIO) was added to prevent protein degradation.

    Article Title: De Novo Variants in MRTFB have gain of function activity in Drosophila and are associated with a novel neurodevelopmental phenotype with dysmorphic features
    Article Snippet: MBP fusion proteins (150mM), general actin buffer (5mM Tris-HCl pH 8.0 and 0.2mM CaCl2, Cytoskeleton) were incubated with actin protein (1mM, 2.5mM, 5mM, 10mM, and 20mM respectively) at room temperature with constant rolling. .. After rolling, pre-cleared MBP resin (NEB, E8021S) was added to each tube and further incubated for 16 hours at 4°C. .. After rolling, pre-cleared MBP resin (NEB, E8021S) was added to each tube and further incubated for 16 hours at 4°C.

    Article Title: Cryo-EM structure of the human COP1-DET1 ubiquitin ligase complex
    Article Snippet: .. After centrifugation at 15,000 × g for 50 min, the cell supernatant was incubated with MBP resin (NEB, E8021S) at 4 °C for 1.5–2 h. The beads were washed with wash buffer supplemented with 2 mM ATP. ..

    Article Title: De novo variants in MRTFB have gain-of-function activity in Drosophila and are associated with a novel neurodevelopmental phenotype with dysmorphic features.
    Article Snippet: .. Precleared MBP resin (NEB, E8021S) was added to the supernatant and incubated for 16 hours at 4 ◦C at the orbital rotator. ..

    Article Title: De Novo Variants in MRTFB have gain of function activity in Drosophila and are associated with a novel neurodevelopmental phenotype with dysmorphic features
    Article Snippet: .. Pre-cleared MBP resin (NEB, E8021S) was added to the supernatant and incubated for 16 hours at 4 °C at the orbital rotator. ..

    Centrifugation:

    Article Title: Cryo-EM structure of the human COP1-DET1 ubiquitin ligase complex
    Article Snippet: .. After centrifugation at 15,000 × g for 50 min, the cell supernatant was incubated with MBP resin (NEB, E8021S) at 4 °C for 1.5–2 h. The beads were washed with wash buffer supplemented with 2 mM ATP. ..



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    Image Search Results


    (A) Yeast two-hybrid (Y2H) assay of UBP12/13 and CaMV proteins. Yeast co-transformants grown on nonselective media (-Leu/-Trp) and selective media (-Leu/-Trp/-His/-Ade) were shown. Vet.: empty vector. SD/-L.T indicates Leu and Trp drop-out medium. SD/-L.T.H.A indicates Leu, Trp, His and Ade drop-out medium. (B) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-P6. GST-UBP12, GST-UBP13 and GST (negative control) were used as baits. MBP-P6 were used as target protein. G: GST. (C) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between UBP12/13 and P6 using transgenic Arabidopsis co-expressing P6 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody (negative control). Immunoprecipitates were then analyzed by immunoblotting assay using anti-GFP and anti-FLAG antibody. Input controls were shown. (D) Bimolecular fluorescence complementation (BiFC) assays between UBP12/13 and P6 in Arabidopsis protoplasts. Confocal imaging was performed at 12 h post inoculation. UBP12/13 and P6 were fused to nEYFP and cEYFP, respectively. mCherry-VirD2NLS was co-expressed as a nuclear marker. Bar, 5 μm.

    Journal: PLOS Pathogens

    Article Title: The pathogenicity factor of DNA virus interacts with Arabidopsis deubiquitinases UBP12/13 to promote viral infection

    doi: 10.1371/journal.ppat.1014686

    Figure Lengend Snippet: (A) Yeast two-hybrid (Y2H) assay of UBP12/13 and CaMV proteins. Yeast co-transformants grown on nonselective media (-Leu/-Trp) and selective media (-Leu/-Trp/-His/-Ade) were shown. Vet.: empty vector. SD/-L.T indicates Leu and Trp drop-out medium. SD/-L.T.H.A indicates Leu, Trp, His and Ade drop-out medium. (B) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-P6. GST-UBP12, GST-UBP13 and GST (negative control) were used as baits. MBP-P6 were used as target protein. G: GST. (C) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between UBP12/13 and P6 using transgenic Arabidopsis co-expressing P6 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody (negative control). Immunoprecipitates were then analyzed by immunoblotting assay using anti-GFP and anti-FLAG antibody. Input controls were shown. (D) Bimolecular fluorescence complementation (BiFC) assays between UBP12/13 and P6 in Arabidopsis protoplasts. Confocal imaging was performed at 12 h post inoculation. UBP12/13 and P6 were fused to nEYFP and cEYFP, respectively. mCherry-VirD2NLS was co-expressed as a nuclear marker. Bar, 5 μm.

    Article Snippet: MBP beads (NEB, Cat. No. E8021S) and GST beads (GE Healthcare, Cat. No. 17-0756-01) were used to purify the MBP-fusion proteins and GST-fusion proteins, respectively.

    Techniques: Yeast, Y2H Assay, Plasmid Preparation, In Vitro, Pull Down Assay, Negative Control, Co-Immunoprecipitation Assay, Transgenic Assay, Expressing, Immunoprecipitation, Western Blot, Fluorescence, Confocal, Imaging, Marker

    (A) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-AC2. GST-UBP12, GST-UBP13 and GST (control) were used as baits. MBP-AC2 was used as the target protein. G: GST. (B) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between AC2 and UBP12/13 using the transgenic Arabidopsis co-expressing AC2 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody. Immunoprecipitates were then analyzed by immunoblotting assay using anti-MYC and anti-FLAG antibody. Input proteins were shown. (C) BiFC assays between UBP12/13 and AC2 in N. benthamiana . Confocal images were taken 2 days after infiltration. UBP12/13 and AC2 were respectively fused to nEYFP and cEYFP. H2B-mCherry was as a nuclear protein marker. Bar, 20 μm.

    Journal: PLOS Pathogens

    Article Title: The pathogenicity factor of DNA virus interacts with Arabidopsis deubiquitinases UBP12/13 to promote viral infection

    doi: 10.1371/journal.ppat.1014686

    Figure Lengend Snippet: (A) In vitro pull-down assay shows a direct interaction between GST-UBP12/13 and MBP-AC2. GST-UBP12, GST-UBP13 and GST (control) were used as baits. MBP-AC2 was used as the target protein. G: GST. (B) Co-immunoprecipitation (Co-IP) assay for detecting the interaction between AC2 and UBP12/13 using the transgenic Arabidopsis co-expressing AC2 and UBP12/13. Extracts were immunoprecipitated with anti-FLAG antibody and anti-IgG antibody. Immunoprecipitates were then analyzed by immunoblotting assay using anti-MYC and anti-FLAG antibody. Input proteins were shown. (C) BiFC assays between UBP12/13 and AC2 in N. benthamiana . Confocal images were taken 2 days after infiltration. UBP12/13 and AC2 were respectively fused to nEYFP and cEYFP. H2B-mCherry was as a nuclear protein marker. Bar, 20 μm.

    Article Snippet: MBP beads (NEB, Cat. No. E8021S) and GST beads (GE Healthcare, Cat. No. 17-0756-01) were used to purify the MBP-fusion proteins and GST-fusion proteins, respectively.

    Techniques: In Vitro, Pull Down Assay, Control, Co-Immunoprecipitation Assay, Transgenic Assay, Expressing, Immunoprecipitation, Western Blot, Confocal, Marker